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Sample GSM1128510 Query DataSets for GSM1128510
Status Public on Jan 06, 2014
Title NT2_2011010.1_4R03C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cancer
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g3
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.5749094
cg08255233 0.5956275
cg12256311 0.2461051
cg14094460 0.294471
cg03956243 0.5960851
cg05910615 0.148529
ch.5.87268879R 0.3048725
cg03144560 0.3879033
cg18803079 0.5032906
cg24108215 0.6114483
cg08365438 0.5979212
cg08882650 0.2687176
cg02449698 0.429903
cg22177976 0.8064638
cg15092368 0.6235423
cg22918356 0.5250984
cg22805491 0.4683911
cg10651637 0.3178011
cg03837726 0.5732866
cg07213548 0.4907577

Total number of rows: 454213

Table truncated, full table size 9383 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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