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Sample GSM1128509 Query DataSets for GSM1128509
Status Public on Jan 06, 2014
Title NT2_2010068.1_4R02C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cancer
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g3
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6025927
cg08255233 0.5996842
cg12256311 0.3021755
cg14094460 0.2976017
cg03956243 0.5961289
cg05910615 0.1320163
ch.5.87268879R 0.2661648
cg03144560 0.3273165
cg18803079 0.5603969
cg24108215 0.6391976
cg08365438 0.6575744
cg08882650 0.2854728
cg02449698 0.4644275
cg22177976 0.837079
cg15092368 0.6455787
cg22918356 0.5499995
cg22805491 0.5463153
cg10651637 0.3423902
cg03837726 0.574893
cg07213548 0.5614228

Total number of rows: 454213

Table truncated, full table size 9375 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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