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Sample GSM1128507 Query DataSets for GSM1128507
Status Public on Jan 06, 2014
Title NT2_2010062.1_4R01C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cancer
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g3
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.625582
cg08255233 0.5925012
cg12256311 0.2253675
cg14094460 0.2960359
cg03956243 0.5598592
cg05910615 0.08908207
ch.5.87268879R 0.2517312
cg03144560 0.3506088
cg18803079 0.5553657
cg24108215 0.642226
cg08365438 0.6628961
cg08882650 0.2467298
cg02449698 0.478867
cg22177976 0.8165604
cg15092368 0.6185104
cg22918356 0.5488927
cg22805491 0.54207
cg10651637 0.3035741
cg03837726 0.557249
cg07213548 0.6106107

Total number of rows: 454213

Table truncated, full table size 9382 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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