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Sample GSM1128506 Query DataSets for GSM1128506
Status Public on Jan 06, 2014
Title NT2_2010041.1_4R01C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6388671
cg08255233 0.6035762
cg12256311 0.2264597
cg14094460 0.3657527
cg03956243 0.55296
cg05910615 0.134183
ch.5.87268879R 0.2578747
cg03144560 0.3537876
cg18803079 0.5463847
cg24108215 0.7117543
cg08365438 0.7566289
cg08882650 0.2243374
cg02449698 0.4217172
cg22177976 0.6272137
cg15092368 0.6202753
cg22918356 0.635173
cg22805491 0.435992
cg10651637 0.3262589
cg03837726 0.6224409
cg07213548 0.6221373

Total number of rows: 454213

Table truncated, full table size 9384 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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