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Sample GSM1128505 Query DataSets for GSM1128505
Status Public on Jan 06, 2014
Title NT2_2010040.1_3R06C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6438139
cg08255233 0.6302156
cg12256311 0.246248
cg14094460 0.3728429
cg03956243 0.5897038
cg05910615 0.08024015
ch.5.87268879R 0.2685061
cg03144560 0.3197542
cg18803079 0.5526235
cg24108215 0.6563735
cg08365438 0.6794744
cg08882650 0.2882219
cg02449698 0.4695061
cg22177976 0.8537194
cg15092368 0.6087546
cg22918356 0.5485753
cg22805491 0.5138925
cg10651637 0.321587
cg03837726 0.5695415
cg07213548 0.6150128

Total number of rows: 454213

Table truncated, full table size 9392 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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