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Sample GSM1128504 Query DataSets for GSM1128504
Status Public on Jan 06, 2014
Title NT2_2006003.1_3R06C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6212346
cg08255233 0.637964
cg12256311 0.2445257
cg14094460 0.3187819
cg03956243 0.6310279
cg05910615 0.09607263
ch.5.87268879R 0.2481682
cg03144560 0.3173693
cg18803079 0.5556685
cg24108215 0.6506341
cg08365438 0.6359488
cg08882650 0.2724122
cg02449698 0.4574834
cg22177976 0.7989677
cg15092368 0.616409
cg22918356 0.534849
cg22805491 0.5212692
cg10651637 0.3735208
cg03837726 0.5981195
cg07213548 0.681741

Total number of rows: 454213

Table truncated, full table size 9382 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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