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Sample GSM1128503 Query DataSets for GSM1128503
Status Public on Jan 06, 2014
Title NT2_2008201.1_3R05C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6189766
cg08255233 0.5955123
cg12256311 0.2354837
cg14094460 0.3308913
cg03956243 0.5485443
cg05910615 0.1536648
ch.5.87268879R 0.3267579
cg03144560 0.3477485
cg18803079 0.5103901
cg24108215 0.6410412
cg08365438 0.6330125
cg08882650 0.3109022
cg02449698 0.4592992
cg22177976 0.8600942
cg15092368 0.5785606
cg22918356 0.5152051
cg22805491 0.4934536
cg10651637 0.3374164
cg03837726 0.5817369
cg07213548 0.5950261

Total number of rows: 454213

Table truncated, full table size 9384 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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