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Sample GSM1128502 Query DataSets for GSM1128502
Status Public on Jan 06, 2014
Title NT2_2005499.1_3R05C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6005968
cg08255233 0.5637812
cg12256311 0.2628842
cg14094460 0.3152619
cg03956243 0.623144
cg05910615 0.1277501
ch.5.87268879R 0.2880781
cg03144560 0.329326
cg18803079 0.5429167
cg24108215 0.6822532
cg08365438 0.6274822
cg08882650 0.2962063
cg02449698 0.4368438
cg22177976 0.8028893
cg15092368 0.5766325
cg22918356 0.5123176
cg22805491 0.5239995
cg10651637 0.3128131
cg03837726 0.5622641
cg07213548 0.5767486

Total number of rows: 454213

Table truncated, full table size 9402 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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