|
| Status |
Public on Jan 06, 2014 |
| Title |
NT2_2005499.1_3R05C01 |
| Sample type |
genomic |
| |
|
| Source name |
cervix
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
According to Illumina Infinium Human 450K methylation kit procedures.
|
| |
|
| Hybridization protocol |
According to Illumina Infinium Human 450K methylation kit procedures.
|
| Scan protocol |
iScan scanner was used according to manufacturers protocol.
|
| Description |
g1
|
| Data processing |
Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Apr 23, 2013 |
| Last update date |
Jan 06, 2014 |
| Contact name |
Sanja A Farkas |
| E-mail(s) |
sanja.farkas@orebroll.se
|
| Organization name |
Örebro University hospital
|
| Department |
Laboratory medicine
|
| Street address |
Södra rosen grevsgatan
|
| City |
Örebro |
| ZIP/Postal code |
701 85 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE46306 |
Genome-wide DNA methylation in cervical tissue |
|
