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Sample GSM1128501 Query DataSets for GSM1128501
Status Public on Jan 06, 2014
Title NT2_2006228.1_3R04C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.5993505
cg08255233 0.5880513
cg12256311 0.2863121
cg14094460 0.3713228
cg03956243 0.5550975
cg05910615 0.1689641
ch.5.87268879R 0.3060067
cg03144560 0.3403664
cg18803079 0.4857884
cg24108215 0.6195974
cg08365438 0.5746864
cg08882650 0.3463458
cg02449698 0.4434902
cg22177976 0.8761441
cg15092368 0.6316953
cg22918356 0.5325195
cg22805491 0.4964048
cg10651637 0.2938257
cg03837726 0.5782754
cg07213548 0.5708648

Total number of rows: 454213

Table truncated, full table size 9398 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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