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Sample GSM1128500 Query DataSets for GSM1128500
Status Public on Jan 06, 2014
Title NT2_2005466.1_3R04C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6274907
cg08255233 0.6274516
cg12256311 0.242746
cg14094460 0.3530407
cg03956243 0.5899082
cg05910615 0.1346026
ch.5.87268879R 0.2870064
cg03144560 0.3494731
cg18803079 0.5725117
cg24108215 0.6657283
cg08365438 0.6349406
cg08882650 0.2884168
cg02449698 0.510186
cg22177976 0.7835126
cg15092368 0.5996402
cg22918356 0.5619481
cg22805491 0.489603
cg10651637 0.3457814
cg03837726 0.5699033
cg07213548 0.6344691

Total number of rows: 454213

Table truncated, full table size 9399 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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