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Sample GSM1128499 Query DataSets for GSM1128499
Status Public on Jan 06, 2014
Title NT2_2006090.1_3R03C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6367338
cg08255233 0.5869888
cg12256311 0.2372647
cg14094460 0.3455184
cg03956243 0.4983611
cg05910615 0.1499284
ch.5.87268879R 0.3204658
cg03144560 0.3391034
cg18803079 0.4873986
cg24108215 0.6112316
cg08365438 0.5416439
cg08882650 0.3061585
cg02449698 0.401504
cg22177976 0.8062456
cg15092368 0.5773618
cg22918356 0.5113247
cg22805491 0.4469146
cg10651637 0.3011221
cg03837726 0.5656003
cg07213548 0.5684829

Total number of rows: 454213

Table truncated, full table size 9398 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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