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Sample GSM1128498 Query DataSets for GSM1128498
Status Public on Jan 06, 2014
Title NT2_2005463.1_3R03C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6060743
cg08255233 0.6098132
cg12256311 0.2876889
cg14094460 0.3665065
cg03956243 0.5249891
cg05910615 0.1124046
ch.5.87268879R 0.2739994
cg03144560 0.3773533
cg18803079 0.5328912
cg24108215 0.6425115
cg08365438 0.6486646
cg08882650 0.262934
cg02449698 0.4348014
cg22177976 0.8178112
cg15092368 0.5816501
cg22918356 0.5243158
cg22805491 0.4798958
cg10651637 0.330773
cg03837726 0.5853369
cg07213548 0.6224182

Total number of rows: 454213

Table truncated, full table size 9400 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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