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Sample GSM1128496 Query DataSets for GSM1128496
Status Public on Jan 06, 2014
Title NT2_2005448.1_3R02C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.5937113
cg08255233 0.594689
cg12256311 0.2506263
cg14094460 0.3785756
cg03956243 0.5281796
cg05910615 0.1692685
ch.5.87268879R 0.2949522
cg03144560 0.3550028
cg18803079 0.5257772
cg24108215 0.6233712
cg08365438 0.5845416
cg08882650 0.3205447
cg02449698 0.4359661
cg22177976 0.8032386
cg15092368 0.5683355
cg22918356 0.5216103
cg22805491 0.4608915
cg10651637 0.3060728
cg03837726 0.5498478
cg07213548 0.5835246

Total number of rows: 454213

Table truncated, full table size 9392 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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