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Sample GSM1128495 Query DataSets for GSM1128495
Status Public on Jan 06, 2014
Title NT2_2006024.1_3R01C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6035402
cg08255233 0.594343
cg12256311 0.2364118
cg14094460 0.3783743
cg03956243 0.5814545
cg05910615 0.1480699
ch.5.87268879R 0.264867
cg03144560 0.3238743
cg18803079 0.5996657
cg24108215 0.6365132
cg08365438 0.654576
cg08882650 0.2752039
cg02449698 0.4423186
cg22177976 0.8843242
cg15092368 0.6054465
cg22918356 0.5531566
cg22805491 0.526844
cg10651637 0.3040821
cg03837726 0.5448858
cg07213548 0.5966819

Total number of rows: 454213

Table truncated, full table size 9399 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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