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Sample GSM1128494 Query DataSets for GSM1128494
Status Public on Jan 06, 2014
Title NT2_2005442.1_3R01C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6347293
cg08255233 0.6144035
cg12256311 0.2286027
cg14094460 0.40062
cg03956243 0.5955039
cg05910615 0.1255944
ch.5.87268879R 0.2897022
cg03144560 0.3396043
cg18803079 0.5959684
cg24108215 0.6591772
cg08365438 0.699432
cg08882650 0.3040041
cg02449698 0.4380644
cg22177976 0.8197659
cg15092368 0.5871018
cg22918356 0.5334472
cg22805491 0.5648611
cg10651637 0.2707069
cg03837726 0.6110179
cg07213548 0.6387803

Total number of rows: 454213

Table truncated, full table size 9397 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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