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Sample GSM1128493 Query DataSets for GSM1128493
Status Public on Jan 06, 2014
Title NT2_2008215.1_2R06C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7497873
cg08255233 0.7421295
cg12256311 0.1297269
cg14094460 0.5404183
cg03956243 0.7251722
cg05910615 0.05617126
ch.5.87268879R 0.1976389
cg03144560 0.1687009
cg18803079 0.749065
cg24108215 0.7876008
cg08365438 0.8384966
cg08882650 0.1328611
cg02449698 0.6182157
cg22177976 0.5991193
cg15092368 0.7024651
cg22918356 0.687223
cg22805491 0.7279606
cg10651637 0.1959247
cg03837726 0.6646952
cg07213548 0.7595134

Total number of rows: 454213

Table truncated, full table size 9390 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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