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Sample GSM1128489 Query DataSets for GSM1128489
Status Public on Jan 06, 2014
Title NT2_2008212.1_2R04C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.8536506
cg08255233 0.8194793
cg12256311 0.1731353
cg14094460 0.6509804
cg03956243 0.7568486
cg05910615 0.05394245
ch.5.87268879R 0.2053144
cg03144560 0.2897553
cg18803079 0.8247307
cg24108215 0.8324248
cg08365438 0.8585758
cg08882650 0.2121661
cg02449698 0.6764716
cg22177976 0.7397756
cg15092368 0.6655014
cg22918356 0.6866968
cg22805491 0.7068606
cg10651637 0.2455346
cg03837726 0.7017166
cg07213548 0.8011253

Total number of rows: 454213

Table truncated, full table size 9367 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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