GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1128488 Query DataSets for GSM1128488
Status Public on Jan 06, 2014
Title NT2_2008175.1_2R04C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.8190376
cg08255233 0.758823
cg12256311 0.1013454
cg14094460 0.5717362
cg03956243 0.8066431
cg05910615 0.04603218
ch.5.87268879R 0.1383729
cg03144560 0.2163053
cg18803079 0.808094
cg24108215 0.8679769
cg08365438 0.8388368
cg08882650 0.1302323
cg02449698 0.6261418
cg22177976 0.7427382
cg15092368 0.7075655
cg22918356 0.7454727
cg22805491 0.7630411
cg10651637 0.2135591
cg03837726 0.6511161
cg07213548 0.8109857

Total number of rows: 454213

Table truncated, full table size 9402 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap