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Sample GSM1128487 Query DataSets for GSM1128487
Status Public on Jan 06, 2014
Title NT2_2008210.1_2R03C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.761165
cg08255233 0.6971866
cg12256311 0.1199317
cg14094460 0.5453092
cg03956243 0.7528841
cg05910615 0.04802645
ch.5.87268879R 0.2208817
cg03144560 0.1846064
cg18803079 0.7179183
cg24108215 0.8001995
cg08365438 0.8037158
cg08882650 0.1179063
cg02449698 0.5382465
cg22177976 0.557865
cg15092368 0.6701605
cg22918356 0.6536425
cg22805491 0.6297789
cg10651637 0.1813012
cg03837726 0.6540318
cg07213548 0.7476271

Total number of rows: 454213

Table truncated, full table size 9388 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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