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Sample GSM1128486 Query DataSets for GSM1128486
Status Public on Jan 06, 2014
Title NT2_2008161.1_2R03C01
Sample type genomic
 
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
 
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
 
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
E-mail(s) sanja.farkas@orebroll.se
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
 
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
ID_REF
VALUE Average beta values were arcsine square root transformed.

Data table
ID_REF VALUE
cg09182724 0.776484
cg08255233 0.7417637
cg12256311 0.1167087
cg14094460 0.5544279
cg03956243 0.7513978
cg05910615 0.06229584
ch.5.87268879R 0.2317026
cg03144560 0.2007462
cg18803079 0.7550594
cg24108215 0.8065144
cg08365438 0.8230167
cg08882650 0.1318802
cg02449698 0.6375447
cg22177976 0.620371
cg15092368 0.6896466
cg22918356 0.6892647
cg22805491 0.7349151
cg10651637 0.2034529
cg03837726 0.6582753
cg07213548 0.7788017

Total number of rows: 454213

Table truncated, full table size 9398 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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