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Sample GSM1128484 Query DataSets for GSM1128484
Status Public on Jan 06, 2014
Title NT2_2008159.1_2R02C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7862634
cg08255233 0.7466482
cg12256311 0.1060349
cg14094460 0.5412581
cg03956243 0.7522609
cg05910615 0.0519652
ch.5.87268879R 0.1861681
cg03144560 0.1979598
cg18803079 0.7530803
cg24108215 0.8151742
cg08365438 0.8181134
cg08882650 0.1519052
cg02449698 0.637754
cg22177976 0.5492648
cg15092368 0.7213064
cg22918356 0.7170412
cg22805491 0.7718462
cg10651637 0.2048181
cg03837726 0.670503
cg07213548 0.7698616

Total number of rows: 454213

Table truncated, full table size 9401 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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