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Sample GSM1128482 Query DataSets for GSM1128482
Status Public on Jan 06, 2014
Title NT2_2008157.1_2R01C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7987319
cg08255233 0.7802626
cg12256311 0.09563702
cg14094460 0.5613108
cg03956243 0.8010852
cg05910615 0.04072583
ch.5.87268879R 0.1592802
cg03144560 0.1643723
cg18803079 0.7655354
cg24108215 0.8306993
cg08365438 0.8181
cg08882650 0.1291624
cg02449698 0.6553541
cg22177976 0.6029822
cg15092368 0.7261194
cg22918356 0.7807401
cg22805491 0.7703056
cg10651637 0.1762342
cg03837726 0.6934768
cg07213548 0.8067545

Total number of rows: 454213

Table truncated, full table size 9396 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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