GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1128481 Query DataSets for GSM1128481
Status Public on Jan 06, 2014
Title NT2_2004482.1_1R06C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7936257
cg08255233 0.722763
cg12256311 0.1372775
cg14094460 0.5506756
cg03956243 0.7335629
cg05910615 0.06440011
ch.5.87268879R 0.2399159
cg03144560 0.2142456
cg18803079 0.7569776
cg24108215 0.8068419
cg08365438 0.8266574
cg08882650 0.1625833
cg02449698 0.6354077
cg22177976 0.8373544
cg15092368 0.6934539
cg22918356 0.7075683
cg22805491 0.7254475
cg10651637 0.2280303
cg03837726 0.6417328
cg07213548 0.7613825

Total number of rows: 454213

Table truncated, full table size 9399 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap