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Sample GSM1128479 Query DataSets for GSM1128479
Status Public on Jan 06, 2014
Title NT2_2004395.1_1R05C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7215293
cg08255233 0.7224672
cg12256311 0.1363999
cg14094460 0.4669806
cg03956243 0.7222236
cg05910615 0.06706191
ch.5.87268879R 0.2209898
cg03144560 0.2215683
cg18803079 0.7370343
cg24108215 0.7726997
cg08365438 0.8162284
cg08882650 0.1973967
cg02449698 0.5733997
cg22177976 0.8133181
cg15092368 0.6847372
cg22918356 0.6007347
cg22805491 0.6911029
cg10651637 0.2195035
cg03837726 0.6207268
cg07213548 0.7138492

Total number of rows: 454213

Table truncated, full table size 9392 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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