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Sample GSM1128478 Query DataSets for GSM1128478
Status Public on Jan 06, 2014
Title NT2_2008228.1_1R05C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.8082627
cg08255233 0.7568
cg12256311 0.09232732
cg14094460 0.5330123
cg03956243 0.7524508
cg05910615 0.04511599
ch.5.87268879R 0.1704337
cg03144560 0.1704178
cg18803079 0.8192981
cg24108215 0.7915066
cg08365438 0.8352186
cg08882650 0.1679801
cg02449698 0.6320851
cg22177976 0.6143405
cg15092368 0.7250792
cg22918356 0.6799793
cg22805491 0.7498786
cg10651637 0.1977322
cg03837726 0.6571338
cg07213548 0.775593

Total number of rows: 454213

Table truncated, full table size 9394 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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