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Sample GSM1128477 Query DataSets for GSM1128477
Status Public on Jan 06, 2014
Title NT2_2004294.1_1R04C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6801049
cg08255233 0.6710602
cg12256311 0.1438533
cg14094460 0.501524
cg03956243 0.6989464
cg05910615 0.069906
ch.5.87268879R 0.2411781
cg03144560 0.2393231
cg18803079 0.7551743
cg24108215 0.7901518
cg08365438 0.7463507
cg08882650 0.1878611
cg02449698 0.5457225
cg22177976 0.8117298
cg15092368 0.6601075
cg22918356 0.6674063
cg22805491 0.6407873
cg10651637 0.2323766
cg03837726 0.6091416
cg07213548 0.7282183

Total number of rows: 454213

Table truncated, full table size 9399 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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