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Sample GSM1128476 Query DataSets for GSM1128476
Status Public on Jan 06, 2014
Title NT2_2008227.1_1R04C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7591131
cg08255233 0.719864
cg12256311 0.1475199
cg14094460 0.5058274
cg03956243 0.7525818
cg05910615 0.06707547
ch.5.87268879R 0.2034189
cg03144560 0.2421176
cg18803079 0.7675244
cg24108215 0.7958311
cg08365438 0.7920578
cg08882650 0.2000145
cg02449698 0.5925508
cg22177976 0.6825698
cg15092368 0.7042577
cg22918356 0.6782187
cg22805491 0.7003009
cg10651637 0.2636706
cg03837726 0.6464903
cg07213548 0.7295712

Total number of rows: 454213

Table truncated, full table size 9394 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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