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Sample GSM1128475 Query DataSets for GSM1128475
Status Public on Jan 06, 2014
Title NT2_2004126.1_1R03C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cin3
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g1
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7489132
cg08255233 0.6923156
cg12256311 0.1495275
cg14094460 0.483191
cg03956243 0.7621152
cg05910615 0.07375911
ch.5.87268879R 0.2138815
cg03144560 0.2336198
cg18803079 0.7512949
cg24108215 0.7857473
cg08365438 0.791131
cg08882650 0.1807588
cg02449698 0.6148804
cg22177976 0.8237535
cg15092368 0.6713277
cg22918356 0.654906
cg22805491 0.6888162
cg10651637 0.2521029
cg03837726 0.6405639
cg07213548 0.7405226

Total number of rows: 454213

Table truncated, full table size 9400 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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