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Sample GSM1128474 Query DataSets for GSM1128474
Status Public on Jan 06, 2014
Title NT2_2008226.1_1R03C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7613813
cg08255233 0.705461
cg12256311 0.1191519
cg14094460 0.4807545
cg03956243 0.7260405
cg05910615 0.08275472
ch.5.87268879R 0.2178665
cg03144560 0.2488854
cg18803079 0.7408405
cg24108215 0.7767971
cg08365438 0.7989376
cg08882650 0.1484456
cg02449698 0.5813565
cg22177976 0.6735367
cg15092368 0.7188283
cg22918356 0.6782942
cg22805491 0.6770116
cg10651637 0.2299845
cg03837726 0.670286
cg07213548 0.7235118

Total number of rows: 454213

Table truncated, full table size 9397 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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