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Sample GSM1128473 Query DataSets for GSM1128473
Status Public on Jan 06, 2014
Title NT2_2009042.1_1R02C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7562767
cg08255233 0.6956016
cg12256311 0.1210025
cg14094460 0.5455974
cg03956243 0.7249943
cg05910615 0.05956648
ch.5.87268879R 0.1982647
cg03144560 0.1710648
cg18803079 0.7666188
cg24108215 0.792262
cg08365438 0.7997869
cg08882650 0.1592335
cg02449698 0.5876283
cg22177976 0.5726228
cg15092368 0.6743322
cg22918356 0.6608576
cg22805491 0.6286686
cg10651637 0.2187823
cg03837726 0.6696528
cg07213548 0.7667076

Total number of rows: 454213

Table truncated, full table size 9399 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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