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Sample GSM1128472 Query DataSets for GSM1128472
Status Public on Jan 06, 2014
Title NT2_2008218.1_1R02C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7801616
cg08255233 0.721392
cg12256311 0.132689
cg14094460 0.5353836
cg03956243 0.7524049
cg05910615 0.06879639
ch.5.87268879R 0.1983492
cg03144560 0.218314
cg18803079 0.746259
cg24108215 0.7876588
cg08365438 0.7783365
cg08882650 0.1683419
cg02449698 0.5793718
cg22177976 0.7316853
cg15092368 0.6962734
cg22918356 0.7099714
cg22805491 0.6694052
cg10651637 0.2301167
cg03837726 0.6441372
cg07213548 0.6984388

Total number of rows: 454213

Table truncated, full table size 9397 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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