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Sample GSM1128471 Query DataSets for GSM1128471
Status Public on Jan 06, 2014
Title NT2_2009033.1_1R01C02
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: normal
hpv status: negative
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g0
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.7940802
cg08255233 0.7596952
cg12256311 0.1671523
cg14094460 0.5470374
cg03956243 0.7668975
cg05910615 0.05588872
ch.5.87268879R 0.1915764
cg03144560 0.2223037
cg18803079 0.7618471
cg24108215 0.7520957
cg08365438 0.8666471
cg08882650 0.1839383
cg02449698 0.6134696
cg22177976 0.5709483
cg15092368 0.6930815
cg22918356 0.7045799
cg22805491 0.7253052
cg10651637 0.233599
cg03837726 0.6603855
cg07213548 0.7602844

Total number of rows: 454213

Table truncated, full table size 9395 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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