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Sample GSM1124581 Query DataSets for GSM1124581
Status Public on Apr 20, 2013
Title M_133A_116_HC_0_C_p
Sample type RNA
 
Source name Post-mortem human brain tissue: Hippocampus
Organism Homo sapiens
Characteristics genechip assay site: M
original genechip type: U133P
subject id: 116
brain region: hippocampus
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 4.72839319
10001_at 5.133032517
10002_at 4.804974084
10003_at 4.477429135
100048912_at 5.815940143
10004_at 4.983709009
10005_at 7.214453781
10006_at 8.026641784
10007_at 7.215114317
10009_at 4.169519496
1000_at 7.934227054
10010_at 5.535147888
100127886_at 3.987284338
100127972_at 4.615785301
100128008_at 6.496291526
100128062_at 8.927500906
100128414_at 4.063126005
100128919_at 6.207868211
100129015_at 4.577230445
100129128_at 4.341265956

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124581_M_133A_116_HC_0_C_p.cel.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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