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Sample GSM1124559 Query DataSets for GSM1124559
Status Public on Apr 20, 2013
Title D_133A_28_HC_1_C_p
Sample type RNA
 
Source name Post-mortem human brain tissue: Hippocampus
Organism Homo sapiens
Characteristics genechip assay site: D
original genechip type: U133P
subject id: 28
brain region: hippocampus
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 4.842253754
10001_at 5.394710246
10002_at 4.880553419
10003_at 4.56795503
100048912_at 6.175225152
10004_at 5.360804855
10005_at 7.002323094
10006_at 7.682760546
10007_at 7.11372578
10009_at 4.240333031
1000_at 7.927816864
10010_at 5.525227003
100127886_at 4.107583998
100127972_at 4.673512679
100128008_at 6.305226172
100128062_at 8.436830946
100128414_at 4.264967329
100128919_at 6.542728788
100129015_at 4.360634053
100129128_at 4.421053496

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124559_D_133A_28_HC_1_C_p.cel.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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