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Sample GSM1124507 Query DataSets for GSM1124507
Status Public on Apr 20, 2013
Title M_133A_4_DLPFC_1_C_p
Sample type RNA
 
Source name Post-mortem human brain tissue: Dorsolateral Prefrontal Cortex
Organism Homo sapiens
Characteristics genechip assay site: M
original genechip type: U133P
subject id: 4
brain region: dorsolateral prefrontal cortex
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 5.14037149
10001_at 5.86803069
10002_at 5.060496923
10003_at 4.571293169
100048912_at 5.884789373
10004_at 4.836605668
10005_at 7.02209635
10006_at 8.167824135
10007_at 8.019019407
10009_at 4.226838237
1000_at 7.736215452
10010_at 5.404702432
100127886_at 4.061198165
100127972_at 4.854142472
100128008_at 6.59550164
100128062_at 9.030286633
100128414_at 4.221388173
100128919_at 6.002526133
100129015_at 4.484180023
100129128_at 4.399775283

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124507_M_133A_4_DLPFC_1_C_p.cel.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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