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Sample GSM1124460 Query DataSets for GSM1124460
Status Public on Apr 20, 2013
Title M_133A_47_DLPFC_1_C_r
Sample type RNA
 
Source name Post-mortem human brain tissue: Dorsolateral Prefrontal Cortex
Organism Homo sapiens
Characteristics genechip assay site: M
original genechip type: U133A
subject id: 47
brain region: dorsolateral prefrontal cortex
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 5.0531815
10001_at 5.203029881
10002_at 5.322951278
10003_at 4.342179047
100048912_at 6.454017911
10004_at 5.105480887
10005_at 6.732434429
10006_at 5.828317958
10007_at 6.700326434
10009_at 4.234129584
1000_at 7.462053971
10010_at 5.004020388
100127886_at 4.192735157
100127972_at 5.023928422
100128008_at 8.428899445
100128062_at 7.611629668
100128414_at 4.272706886
100128919_at 6.773501123
100129015_at 5.113499394
100129128_at 4.785676417

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124460_M_133A_47_DLPFC_1_C_r.cel.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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