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Sample GSM1124381 Query DataSets for GSM1124381
Status Public on Apr 20, 2013
Title D_133A_113_DLPFC_1_C
Sample type RNA
 
Source name Post-mortem human brain tissue: Dorsolateral Prefrontal Cortex
Organism Homo sapiens
Characteristics genechip assay site: D
original genechip type: U133A
subject id: 113
brain region: dorsolateral prefrontal cortex
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 5.051477153
10001_at 5.282570294
10002_at 5.363517099
10003_at 4.476089836
100048912_at 6.502816183
10004_at 5.382631415
10005_at 6.998900573
10006_at 7.260178475
10007_at 7.095570199
10009_at 4.21875124
1000_at 7.876531817
10010_at 5.033012454
100127886_at 4.389522277
100127972_at 5.501658324
100128008_at 6.225179309
100128062_at 8.616936864
100128414_at 4.246898475
100128919_at 7.176656708
100129015_at 4.817698206
100129128_at 4.794304697

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124381_D_133A_113_DLPFC_1_C.cel.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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