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Sample GSM1124084 Query DataSets for GSM1124084
Status Public on Apr 20, 2013
Title D_133A_38_Amy_0_C
Sample type RNA
 
Source name Post-mortem human brain tissue: Amygdala
Organism Homo sapiens
Characteristics genechip assay site: D
original genechip type: U133A
subject id: 38
brain region: amygdala
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 5.5866001
10001_at 5.783496648
10002_at 6.15472781
10003_at 4.95263957
100048912_at 6.94576797
10004_at 5.911682363
10005_at 6.921422893
10006_at 7.62601702
10007_at 7.712382278
10009_at 4.624966623
1000_at 8.544858112
10010_at 5.363598975
100127886_at 4.708726056
100127972_at 5.704276866
100128008_at 7.543746882
100128062_at 8.990310329
100128414_at 4.674007682
100128919_at 7.300638111
100129015_at 5.392685826
100129128_at 5.116674666

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124084_D_133A_38_Amy_0_C.cel.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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