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Sample GSM1121589 Query DataSets for GSM1121589
Status Public on Apr 12, 2013
Title Bmi1KO.2088
Sample type RNA
Source name Mouse incisor dental epithelia
Organism Mus musculus
Characteristics genotype: Bmi1-/-
tissue: incisor dental epithelia
genetic background: mixed
Extracted molecule total RNA
Extraction protocol Whole incisors were incubated in accumax, dental epithlial were mechanically separated from mesenchyme and total RNA was extracted using the Qiagen Rneasy mini kit.
Label Cy3
Label protocol standard Agilent protocol
Hybridization protocol Hybridizations were performed for 17 hrs, according to the manufacturers protocol.
Scan protocol Arrays were scanned using the Agilent microarray scanner and raw signal intensities were extracted with Feature Extraction v10.6 software.
Data processing This dataset was normalized using the quantile normalization method that is proposed by Bolstad et al (2003). No background subtraction was performed, and the median feature pixel intensity was used as the raw signal before normalization.
Submission date Apr 11, 2013
Last update date Apr 18, 2013
Contact name Brian Biehs
Organization name UCSF
Street address 505 Parnassus Ave
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
Platform ID GPL11641
Series (2)
GSE45999 Bmi1 mutant vs. WT dental epithelia
GSE46001 Bmi1

Data table header descriptions
VALUE log2 normalized signal intensity

Data table
A_52_P346987 9.588831733
A_51_P256170 12.91993406
A_51_P502685 15.35423647
A_52_P194971 8.112765282
A_51_P496245 7.759888183
A_51_P458638 10.16152558
A_51_P443443 10.34124082
A_52_P63361 15.1547049
A_51_P123039 14.63121117
A_52_P487686 8.832890014
A_51_P384894 9.487714446
A_52_P537827 10.97871046
A_51_P520879 7.931106833
A_52_P105374 8.804736052
A_51_P273750 14.98298912
A_51_P132185 8.496604155
A_51_P144813 6.763212367
A_51_P480136 8.630494662
A_51_P509997 11.19765825
A_51_P148612 13.08837936

Total number of rows: 41174

Table truncated, full table size 997 Kbytes.

Supplementary file Size Download File type/resource
GSM1121589_Bmi1KO.2088.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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