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Sample GSM1121586 Query DataSets for GSM1121586
Status Public on Apr 12, 2013
Title WT.2093
Sample type RNA
 
Source name Mouse incisor dental epithelia
Organism Mus musculus
Characteristics genotype: WT
tissue: incisor dental epithelia
genetic background: mixed
Extracted molecule total RNA
Extraction protocol Whole incisors were incubated in accumax, dental epithlial were mechanically separated from mesenchyme and total RNA was extracted using the Qiagen Rneasy mini kit.
Label Cy3
Label protocol standard Agilent protocol
 
Hybridization protocol Hybridizations were performed for 17 hrs, according to the manufacturers protocol.
Scan protocol Arrays were scanned using the Agilent microarray scanner and raw signal intensities were extracted with Feature Extraction v10.6 software.
Data processing This dataset was normalized using the quantile normalization method that is proposed by Bolstad et al (2003). No background subtraction was performed, and the median feature pixel intensity was used as the raw signal before normalization.
 
Submission date Apr 11, 2013
Last update date Apr 18, 2013
Contact name Brian Biehs
E-mail(s) brianbiehs@gmail.com
Organization name UCSF
Street address 505 Parnassus Ave
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL11641
Series (2)
GSE45999 Bmi1 mutant vs. WT dental epithelia
GSE46001 Bmi1

Data table header descriptions
ID_REF
VALUE log2 normalized signal intensity

Data table
ID_REF VALUE
A_52_P346987 4.951284715
A_51_P256170 5.041659152
A_51_P502685 9.451082294
A_52_P194971 4.854868383
A_51_P496245 4.903881846
A_51_P458638 4.751544059
A_51_P443443 10.60153868
A_52_P63361 12.14457859
A_51_P123039 10.33392402
A_52_P487686 5.162391329
A_51_P384894 5.82336724
A_52_P537827 6.246740598
A_51_P520879 8.517915393
A_52_P105374 8.673088193
A_51_P273750 11.84737549
A_51_P132185 5.202123824
A_51_P144813 5.022367813
A_51_P480136 5.084808388
A_51_P509997 7.576956665
A_51_P148612 9.915225836

Total number of rows: 41174

Table truncated, full table size 999 Kbytes.




Supplementary file Size Download File type/resource
GSM1121586_WT.2093.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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