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Sample GSM1121583 Query DataSets for GSM1121583
Status Public on Apr 12, 2013
Title WT.2824
Sample type RNA
Source name Mouse incisor dental epithelia
Organism Mus musculus
Characteristics genotype: WT
tissue: incisor dental epithelia
genetic background: mixed
Extracted molecule total RNA
Extraction protocol Whole incisors were incubated in accumax, dental epithlial were mechanically separated from mesenchyme and total RNA was extracted using the Qiagen Rneasy mini kit.
Label Cy3
Label protocol standard Agilent protocol
Hybridization protocol Hybridizations were performed for 17 hrs, according to the manufacturers protocol.
Scan protocol Arrays were scanned using the Agilent microarray scanner and raw signal intensities were extracted with Feature Extraction v10.6 software.
Data processing This dataset was normalized using the quantile normalization method that is proposed by Bolstad et al (2003). No background subtraction was performed, and the median feature pixel intensity was used as the raw signal before normalization.
Submission date Apr 11, 2013
Last update date Apr 18, 2013
Contact name Brian Biehs
Organization name UCSF
Street address 505 Parnassus Ave
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
Platform ID GPL11641
Series (2)
GSE45999 Bmi1 mutant vs. WT dental epithelia
GSE46001 Bmi1

Data table header descriptions
VALUE log2 normalized signal intensity

Data table
A_52_P346987 4.781359714
A_51_P256170 6.030667136
A_51_P502685 11.57725178
A_52_P194971 4.876516947
A_51_P496245 4.921840937
A_51_P458638 5.707359132
A_51_P443443 5
A_52_P63361 12.85333393
A_51_P123039 11.54408904
A_52_P487686 5.375039431
A_51_P384894 5.753216749
A_52_P537827 7.627989784
A_51_P520879 4.781359714
A_52_P105374 5.041659152
A_51_P273750 13.54147781
A_51_P132185 5.189824559
A_51_P144813 5.041659152
A_51_P480136 5.022367813
A_51_P509997 7.844313461
A_51_P148612 10.66455839

Total number of rows: 41174

Table truncated, full table size 990 Kbytes.

Supplementary file Size Download File type/resource
GSM1121583_WT.2084.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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