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Sample GSM1113488 Query DataSets for GSM1113488
Status Public on Aug 10, 2013
Title ponAbe2 (8 of 9)
Sample type genomic
 
Channel 1
Source name fibroblast cell line AG06209
Organism Pongo abelii
Characteristics cell type: fibroblast cell line
coriell id: AG06209
Growth protocol standard for fibroblast cell lines
Extracted molecule genomic DNA
Extraction protocol standard DNA extraction from cell lines using cell lysis
Label Cy5
Label protocol Agilent recommended protocol
 
Channel 2
Source name fibroblast cell line GM04272
Organism Pongo abelii
Characteristics cell type: fibroblast cell line
coriell id: GM04272
Growth protocol standard for fibroblast cell lines
Extracted molecule genomic DNA
Extraction protocol standard DNA extraction from cell lines using cell lysis
Label Cy3
Label protocol Agilent recommended protocol
 
 
Hybridization protocol Agilent recommended protocol
Scan protocol scan at 3 uM resolution
Description Dye bias correction was performed using default settings in Agilent Feature Extraction.
Data processing Agilent Feature Extraction software
 
Submission date Apr 03, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL16925
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 0.000000000e+000
2 0.000000000e+000
3 0.000000000e+000
4 8.994456920e-003
5 5.014708147e-002
6 6.860651430e-002
7 3.902233676e-001
8 -1.166744262e-001
9 -4.950843137e-002
10 -8.005571842e-003
11 -4.838667968e-002
12 7.361447655e-002
13 -9.509144741e-003
14 -4.205531247e-002
15 -3.936443848e-002
16 -4.347206088e-002
17 -1.423734993e-001
18 9.531155176e-003
19 -4.617656725e-002
20 2.954299297e-003

Total number of rows: 969432

Table truncated, full table size 23102 Kbytes.




Supplementary file Size Download File type/resource
GSM1113488_US85003610_253595610001_S01_CGH_105_Jan09.txt.gz 98.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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