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Sample GSM1113249 Query DataSets for GSM1113249
Status Public on Nov 04, 2013
Title genomic DNA from undifferentiated, untransduced H9 hESC, replicate A
Sample type genomic
Source name undifferentiated_untransduced H9 hESC
Organism Homo sapiens
Characteristics cell line: H9
cell type: Cultured hESC
genotype/variation: untransduced control
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from cultured cells using Gentra Puregene DNA extraction Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description samples were hybridized on to 2 different arrays, this sample was done on array 1
Data processing non_normalized_array*.txt contains unmethylated and methylated signal intensities
Illumina Genome Studio Methylation data were imported into the Illumina Genome Studio software and converted to a Partek Project File (.ppj) with the Partek Methylation Module
GenomeStudio Data Analysis Software’s Gene Expression Module (GSGX) Version 1.1.0
Submission date Apr 03, 2013
Last update date Nov 04, 2013
Contact name Sangeetha Kaveri Mahadevan
Organization name Baylor College of Medicine
Department Obsterics and Gynecology
Lab Ignatia Van den Veyver
Street address 1250 Moursund St, Room 1025
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
Platform ID GPL13534
Series (1)
GSE45727 NLRP7 promotes trophoblast lineage differentiation, YY1 binding and alters CpG methylation

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.72224 0
cg00000108 0.94458 0
cg00000109 0.88043 0
cg00000165 0.09938 0
cg00000236 0.85148 0
cg00000289 0.72799 0
cg00000292 0.83168 0
cg00000321 0.19568 0
cg00000363 0.11582 0
cg00000622 0.02142 0
cg00000658 0.77967 0
cg00000714 0.27098 0
cg00000721 0.89051 0
cg00000734 0.09146 0
cg00000769 0.09214 0
cg00000807 0.78602 0
cg00000884 0.78732 0
cg00000905 0.11365 0
cg00000924 0.4472 0
cg00000948 0.82388 0

Total number of rows: 485577

Table truncated, full table size 9911 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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