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Sample GSM1111212 Query DataSets for GSM1111212
Status Public on Apr 21, 2014
Title Bacteroides thetaiotaomicron response in cecum of Fut2_KO mouse fed with polysaccharide-deficient diet rep4
Sample type RNA
 
Source name BT_Fut2_KO mouse cecum_polysaccharide-deficient diet
Organism Bacteroides thetaiotaomicron
Characteristics strain: VPI-5482
host/mouse strain: C57BL/6J
host/mouse genotype: Fut2_KO
host fed with: polysaccharide-deficient diet
bacteria harvested from: BT-colonized mice cecum
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy mini column extraction, Ambion DNA free treatment
Label Biotin
Label protocol Enzo Biochemicals Bioarray terminal labeling kit
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description BT_Fut2_KO_PDD_4
Data processing The raw data were RMA-MS normalized using R-2.9.1. and log2 transformed, excluding other species present on chip.
 
Submission date Mar 29, 2013
Last update date Apr 21, 2014
Contact name Angela M Marcobal
E-mail(s) marcobal@stanford.edu
Phone 1-650-721-2961
Fax 1-650-498-7147
URL http://sonnenburglab.stanford.edu/index.html
Organization name Stanford University
Department Microbiology and Immunology
Lab Justin Sonnenburg lab
Street address 299 Campus Drive
City Stanford
State/province California
ZIP/Postal code 94305
Country USA
 
Platform ID GPL1821
Series (1)
GSE45641 Intestine-adapted bacterial symbiont response to polysaccharide rich and polysaccharide deficient diets in mice lacking fucosyltransferase-2

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
BT0001_at 6.002337169
BT0002_at 6.310416398
BT0003_at 5.290769274
BT0004_at 4.385495478
BT0005_at 5.305011638
BT0006_at 4.312026077
BT0007_at 3.834038758
BT0008_at 9.09281945
BT0009_at 6.738526451
BT0010_at 6.516208298
BT0011_at 5.27975316
BT0012_at 5.922329753
BT0013_at 5.150036343
BT0014_at 5.88034094
BT0015_at 6.221927273
BT0016_at 5.876702891
BT0017_at 5.137557011
BT0018_at 5.974763809
BT0019_at 4.934670982
BT0020_at 5.277364262

Total number of rows: 4741

Table truncated, full table size 101 Kbytes.




Supplementary file Size Download File type/resource
GSM1111212_BT_Fut2_KO_PDD_4.CEL.gz 881.2 Kb (ftp)(http) CEL
Processed data included within Sample table

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