|
Status |
Public on Apr 21, 2014 |
Title |
Bacteroides thetaiotaomicron response in cecum of Fut2_KO mouse fed with polysaccharide-deficient diet rep4 |
Sample type |
RNA |
|
|
Source name |
BT_Fut2_KO mouse cecum_polysaccharide-deficient diet
|
Organism |
Bacteroides thetaiotaomicron |
Characteristics |
strain: VPI-5482 host/mouse strain: C57BL/6J host/mouse genotype: Fut2_KO host fed with: polysaccharide-deficient diet bacteria harvested from: BT-colonized mice cecum
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy mini column extraction, Ambion DNA free treatment
|
Label |
Biotin
|
Label protocol |
Enzo Biochemicals Bioarray terminal labeling kit
|
|
|
Hybridization protocol |
Affymetrix
|
Scan protocol |
Affymetrix
|
Description |
BT_Fut2_KO_PDD_4
|
Data processing |
The raw data were RMA-MS normalized using R-2.9.1. and log2 transformed, excluding other species present on chip.
|
|
|
Submission date |
Mar 29, 2013 |
Last update date |
Apr 21, 2014 |
Contact name |
Angela M Marcobal |
E-mail(s) |
marcobal@stanford.edu
|
Phone |
1-650-721-2961
|
Fax |
1-650-498-7147
|
URL |
http://sonnenburglab.stanford.edu/index.html
|
Organization name |
Stanford University
|
Department |
Microbiology and Immunology
|
Lab |
Justin Sonnenburg lab
|
Street address |
299 Campus Drive
|
City |
Stanford |
State/province |
California |
ZIP/Postal code |
94305 |
Country |
USA |
|
|
Platform ID |
GPL1821 |
Series (1) |
GSE45641 |
Intestine-adapted bacterial symbiont response to polysaccharide rich and polysaccharide deficient diets in mice lacking fucosyltransferase-2 |
|