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Sample GSM1111203 Query DataSets for GSM1111203
Status Public on Apr 21, 2014
Title Bacteroides thetaiotaomicron response in cecum of Fut2(+/-)_KO mouse fed with polysaccharide-rich diet rep2
Sample type RNA
 
Source name BT_Fut2(+/-)_KO mouse cecum_polysaccharide-rich diet
Organism Bacteroides thetaiotaomicron
Characteristics strain: VPI-5482
host/mouse strain: C57BL/6J
host/mouse genotype: Fut2(+/-)_KO
host fed with: polysaccharide-rich diet
bacteria harvested from: BT-colonized mice cecum
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy mini column extraction, Ambion DNA free treatment
Label Biotin
Label protocol Enzo Biochemicals Bioarray terminal labeling kit
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description BT_Fut2(+/-)_SD_2
Data processing The raw data were RMA-MS normalized using R-2.9.1. and log2 transformed, excluding other species present on chip.
 
Submission date Mar 29, 2013
Last update date Apr 21, 2014
Contact name Angela M Marcobal
E-mail(s) marcobal@stanford.edu
Phone 1-650-721-2961
Fax 1-650-498-7147
URL http://sonnenburglab.stanford.edu/index.html
Organization name Stanford University
Department Microbiology and Immunology
Lab Justin Sonnenburg lab
Street address 299 Campus Drive
City Stanford
State/province California
ZIP/Postal code 94305
Country USA
 
Platform ID GPL1821
Series (1)
GSE45641 Intestine-adapted bacterial symbiont response to polysaccharide rich and polysaccharide deficient diets in mice lacking fucosyltransferase-2

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
BT0001_at 6.745764731
BT0002_at 6.712299018
BT0003_at 5.199614127
BT0004_at 4.448153919
BT0005_at 5.203222826
BT0006_at 4.4343758
BT0007_at 3.81153549
BT0008_at 8.810143908
BT0009_at 6.77132713
BT0010_at 6.591619103
BT0011_at 5.444028081
BT0012_at 6.083646524
BT0013_at 4.977542213
BT0014_at 5.927123137
BT0015_at 6.208788503
BT0016_at 5.892623713
BT0017_at 5.267693571
BT0018_at 5.929012171
BT0019_at 4.87394164
BT0020_at 5.657239334

Total number of rows: 4741

Table truncated, full table size 101 Kbytes.




Supplementary file Size Download File type/resource
GSM1111203_BT_Fut2_+_-_SD_2.CEL.gz 914.0 Kb (ftp)(http) CEL
Processed data included within Sample table

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