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GEO accession:
Sample GSM11028
Query DataSets for GSM11028
Status
Public on May 31, 2004
Title
BVDV2-infected MDBK cells
Sample type
SAGE
Anchor
NlaIII
Tag Count
21225
Tag Length
10
Source name
BVDV2-infected MDBK cells
Organism
Bos taurus
Extracted molecule
total RNA
Description
Madin-Darby bovine kidney cells were infected at 40% cofluency with MOI of 1.0 of BVDV2 strain 1373. Cells were collected at 48 hours post-infection when cells were 95% confluent
Submission date
Oct 08, 2003
Last update date
Nov 19, 2008
Contact name
John D. Neill
E-mail(s)
john.neill@ars.usda.gov
Phone
515-663-7730
Organization name
National Animal Disease Center
Lab
VPDLRU
Street address
2300 Dayton Ave.
City
Ames
State/province
IA
ZIP/Postal code
50010
Country
USA
Platform ID
GPL223
Series (1)
GSE756
Effect of bovine viral diarrhoea virus infection in Madin-Darby bovine kidney cells
Data table header descriptions
TAG
Tag sequence
COUNT
number of times tag appeared
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
732
34487.63
AAAAAAAAAC
5
235.57
AAAAAAAAAG
11
518.26
AAAAAAAAAT
7
329.80
AAAAAAAACA
2
94.23
AAAAAAAATT
2
94.23
AAAAAAACAA
2
94.23
AAAAAAAGAA
4
188.46
AAAAAAATAA
1
47.11
AAAAAAATAC
1
47.11
AAAAAACAAA
2
94.23
AAAAAACATA
15
706.71
AAAAAACTTT
13
612.49
AAAAAAGAAA
4
188.46
AAAAAAGCAA
1
47.11
AAAAAAGTTT
7
329.80
AAAAAATAAA
2
94.23
AAAAAATATT
2
94.23
AAAAAATGCG
2
94.23
AAAAACAAAA
2
94.23
Total number of rows:
4345
Table truncated, full table size
82 Kbytes
.
Supplementary data files not provided
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