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Sample GSM11 Query DataSets for GSM11
Status Public on Jan 24, 2001
Title NHGRI_A-357
Sample type RNA
 
Channel 1
Source name melanoma, skin
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: skin
Patient sex: 54
Patient age: female
Passage number: ND
p16 mutation status: mutation
Invasive ability: 2.8 +/- 0.2%
Vasculogenic mimicry: -
Gel contraction: ND
Cell motility: 67.80 +/- 4.40
Scratch wound (%): 26

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 09, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 44 114 62 132 2610446 18508.3 9076.7 104 3803.2 484.8 44 114 62 132 5810117 45917.9 21522.9 125 3741.3 294.0 125 0.403 -0.2284133 99.000 0.318 1.462 0.682 0.188 0.591
2 661 124 679 142 1 1.0 0.0 0 3585.2 388.6 661 124 679 142 1 1.0 0.0 0 4249.2 271.6 0 1.000 0.1661343 99.000 0.318 1.462 0.682 0.188 1.466
3 80 114 98 132 1 1.0 0.0 0 3337.7 365.4 80 114 98 132 1 1.0 0.0 0 3649.5 302.7 0 1.000 0.1661343 99.000 0.318 1.462 0.682 0.188 1.466
4 697 124 715 142 163405 1620.3 918.1 0 3486.1 332.3 697 124 715 142 216392 2459.5 1195.3 40 4302.8 251.1 40 0.659 -0.0150233 99.000 0.318 1.462 0.682 0.188 0.966
5 117 114 135 132 593563 3319.6 2636.1 74 3349.7 307.2 117 114 135 132 679996 4073.1 3066.5 92 3567.3 216.9 97 0.815 0.0773683 99.000 0.318 1.462 0.682 0.188 1.195
6 734 124 752 142 913026 19304.2 14800.0 45 3521.4 347.8 734 124 752 142 1377738 30025.8 18819.5 47 4417.7 324.4 48 0.643 -0.0254883 99.000 0.318 1.462 0.682 0.188 0.943
7 153 114 171 132 1005846 8421.5 4663.7 89 3412.0 367.5 153 114 171 132 972755 7766.1 4641.1 91 3678.1 243.2 93 1.084 0.2013973 99.000 0.318 1.462 0.682 0.188 1.590
8 770 124 788 142 571898 10076.8 10069.8 42 3539.8 357.3 770 124 788 142 677613 11738.7 10649.5 50 4395.0 268.9 50 0.858 0.1000263 99.000 0.318 1.462 0.682 0.188 1.259
9 190 113 208 131 744721 7357.7 5526.8 59 3435.3 346.7 190 113 208 131 619681 5170.0 3833.1 75 3810.9 273.4 77 1.423 0.3195223 99.000 0.318 1.462 0.682 0.188 2.087
10 806 123 824 141 1 1.0 0.0 0 3361.7 345.9 806 123 824 141 1 1.0 0.0 0 4434.4 271.0 0 1.000 0.1661343 99.000 0.318 1.462 0.682 0.188 1.466
11 226 113 244 131 618961 4810.9 3483.9 67 3441.9 360.0 226 113 244 131 1334086 13883.0 10308.4 83 3904.9 302.3 83 0.347 -0.2941363 99.000 0.318 1.462 0.682 0.188 0.508
12 843 123 861 141 1 1.0 0.0 0 3272.1 307.5 843 123 861 141 1 1.0 0.0 0 4422.0 255.1 0 1.000 0.1661343 99.000 0.318 1.462 0.682 0.188 1.466
13 52 734 70 752 716714 5345.1 1831.3 88 3290.0 340.0 52 734 70 752 903302 7560.8 2413.7 90 3322.3 250.8 91 0.707 0.0157793 99.000 0.318 1.462 0.682 0.188 1.037
14 649 731 667 749 735571 7773.7 3170.1 72 3719.6 372.8 649 731 667 749 859765 9437.2 3673.7 69 3996.7 238.8 72 0.824 0.0820673 99.000 0.318 1.462 0.682 0.188 1.208
15 88 733 106 751 1786540 17394.1 5376.1 91 3379.6 379.5 88 733 106 751 1962835 19378.5 6029.0 94 3445.2 309.9 94 0.898 0.1192563 99.000 0.318 1.462 0.682 0.188 1.316
16 685 731 703 749 203081 2027.1 1099.8 0 3461.5 591.3 685 731 703 749 287904 3710.7 2075.4 45 4070.5 347.9 45 0.546 -0.0963673 99.000 0.318 1.462 0.682 0.188 0.801
17 125 733 143 751 753758 6510.6 2790.8 77 3407.3 348.7 125 733 143 751 838892 7562.4 2994.6 83 3475.6 294.0 84 0.861 0.1014033 99.000 0.318 1.462 0.682 0.188 1.263
18 722 731 740 749 329738 1168.9 949.6 0 3752.6 418.9 722 731 740 749 480768 3065.4 1471.4 75 4110.3 247.1 75 0.381 -0.2525883 99.000 0.318 1.462 0.682 0.188 0.559
19 161 732 179 750 646043 4430.7 1989.5 80 3447.9 370.8 161 732 179 750 1055641 9272.6 3512.3 89 3601.1 316.3 90 0.478 -0.1542823 99.000 0.318 1.462 0.682 0.188 0.701
20 759 731 777 749 335489 1644.3 1148.3 33 3680.9 352.5 759 731 777 749 455887 3054.5 1804.6 71 4181.8 245.9 71 0.538 -0.1029233 99.000 0.318 1.462 0.682 0.188 0.789

Total number of rows: 8192

Table truncated, full table size 1296 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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