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Sample GSM1098786 Query DataSets for GSM1098786
Status Public on Sep 01, 2013
Title UT0103L [Expression]
Sample type RNA
Source name Leiomyoma
Organism Homo sapiens
Characteristics gender: Female
tissue: frozen tissue ofuterine leiomyoma
disease state: leiomyoma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from tissues using the ISOGEN (NIPPON GENE)
Label biotin
Label protocol Biotinylated cDNA were prepared from 200 ng total RNA with the Ambion WT Expression Kit (Ambion) and Affymetrix GeneChip WT Terminal Labeling Kit (Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description uterine leiomyoma obtained from same case as UT0103M
Data processing The data were analyzed with Partek Genomics Suite 6.5 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date Mar 15, 2013
Last update date Sep 01, 2013
Contact name Ryo Maekawa
Organization name Yamaguchi University School of Medicine
Department Department of Obstetrics and Gynecology
Street address Minami-Kogushi 1-1-1
City Ube
ZIP/Postal code 755-8505
Country Japan
Platform ID GPL6244
Series (2)
GSE45188 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Expression data]
GSE45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma

Data table header descriptions
VALUE log2 RMA signal

Data table
7892501 4.93607
7892502 5.72514
7892503 3.14851
7892504 9.42421
7892505 4.02173
7892506 2.96942
7892507 6.53986
7892508 6.47522
7892509 11.2987
7892510 4.62393
7892511 4.33903
7892512 8.16798
7892513 3.11318
7892514 11.4052
7892515 10.2341
7892516 5.35942
7892517 7.1432
7892518 2.91941
7892519 5.50584
7892520 10.2956

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1098786_UT0103L_HuGene-1_0-st-v1_.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM1098786_UT0103L_HuGene-1_0-st-v1_.rma-gene-default.chp.gz 255.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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