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Sample GSM1098785 Query DataSets for GSM1098785
Status Public on Sep 01, 2013
Title UT0102L [Expression]
Sample type RNA
Source name Leiomyoma
Organism Homo sapiens
Characteristics gender: Female
tissue: frozen tissue of uterine leiomyoma
disease state: leiomyoma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from tissues using the ISOGEN (NIPPON GENE)
Label biotin
Label protocol Biotinylated cDNA were prepared from 200 ng total RNA with the Ambion WT Expression Kit (Ambion) and Affymetrix GeneChip WT Terminal Labeling Kit (Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description uterine leiomyoma obtained from same case as UT0102M
Data processing The data were analyzed with Partek Genomics Suite 6.5 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date Mar 15, 2013
Last update date Sep 01, 2013
Contact name Ryo Maekawa
Organization name Yamaguchi University School of Medicine
Department Department of Obstetrics and Gynecology
Street address Minami-Kogushi 1-1-1
City Ube
ZIP/Postal code 755-8505
Country Japan
Platform ID GPL6244
Series (2)
GSE45188 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Expression data]
GSE45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma

Data table header descriptions
VALUE log2 RMA signal

Data table
7892501 4.04025
7892502 5.25037
7892503 2.9188
7892504 9.72101
7892505 3.0436
7892506 3.60913
7892507 5.86887
7892508 5.97489
7892509 11.4787
7892510 1.96987
7892511 3.33581
7892512 7.50319
7892513 2.04624
7892514 11.708
7892515 10.4739
7892516 5.3315
7892517 7.00196
7892518 1.45037
7892519 6.09834
7892520 9.97238

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1098785_UT0102L_HuGene-1_0-st-v1_.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM1098785_UT0102L_HuGene-1_0-st-v1_.rma-gene-default.chp.gz 255.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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