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Sample GSM1098784 Query DataSets for GSM1098784
Status Public on Sep 01, 2013
Title UT0101L [Expression]
Sample type RNA
Source name Leiomyoma
Organism Homo sapiens
Characteristics gender: Female
tissue: frozen tissue of uterine leiomyoma
disease state: leiomyoma
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from tissues using the ISOGEN (NIPPON GENE)
Label biotin
Label protocol Biotinylated cDNA were prepared from 200 ng total RNA with the Ambion WT Expression Kit (Ambion) and Affymetrix GeneChip WT Terminal Labeling Kit (Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description uterine leiomyoma obtained from same case as UT0101M
Data processing The data were analyzed with Partek Genomics Suite 6.5 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date Mar 15, 2013
Last update date Sep 01, 2013
Contact name Ryo Maekawa
Organization name Yamaguchi University School of Medicine
Department Department of Obstetrics and Gynecology
Street address Minami-Kogushi 1-1-1
City Ube
ZIP/Postal code 755-8505
Country Japan
Platform ID GPL6244
Series (2)
GSE45188 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Expression data]
GSE45189 Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma

Data table header descriptions
VALUE log2 RMA signal

Data table
7892501 5.15759
7892502 5.3593
7892503 2.73515
7892504 9.68158
7892505 3.59636
7892506 2.64202
7892507 5.76068
7892508 4.69087
7892509 11.2334
7892510 4.27936
7892511 3.58887
7892512 7.94767
7892513 2.14301
7892514 11.822
7892515 10.5506
7892516 4.02513
7892517 6.91077
7892518 3.28181
7892519 6.16577
7892520 10.2953

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1098784_UT0101L_HuGene-1_0-st-v1_.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM1098784_UT0101L_HuGene-1_0-st-v1_.rma-gene-default.chp.gz 255.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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